(no title)
nialo | 8 years ago
(I wrote an implementation of Ukkonen's suffix tree algorithm in C as maybe my second C program, it was pretty frustrating for a long time)
nialo | 8 years ago
(I wrote an implementation of Ukkonen's suffix tree algorithm in C as maybe my second C program, it was pretty frustrating for a long time)
burntsushi|8 years ago
> (I wrote an implementation of Ukkonen's suffix tree algorithm in C as maybe my second C program, it was pretty frustrating for a long time)
Oh dear. You are brave. I briefly considered implementing Ukkonen's algorithm, but ran away scared. :-)
The reason why I wrote the SAIS implementation was because I am generally interested in text search, and because I was interested in exploring the idea of building an index around suffix arrays. Once I finished my implementation and realized that the cutting edge SACA algorithm (at the time) was as slow as it was, I mostly gave up that idea.
Since then, I've been itching to find use cases for it. As a former computational biologist, I'm familiar with how they are used in that field, but I've been looking for other places as well. Haven't found one yet, although I can think of some specialized (hypothetical) things where it might be useful.