As for "there seem to be quite a few different Atari 1040ST board designs" noted in the article. There is actually a huge number of different board layouts. Look at the entries for "STF" or "STFM" in this overview: https://temlib.org/AtariForumWiki/index.php/Atari_ST_motherb....
As for why Atari redesigned the board so many times: no idea.
cmrdporcupine|3 years ago