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cd4plus | 1 year ago

yeah, I also disagree with this. It's true Seurat is still heavily used for scRNA/scATAC but I see most new models increasingly being written/tooled for python and based on anndata. Geneformer, scGPT, scVI etc. I wish there was better operability between the scverse stuff and Seurat, but Seurat went their own way from SCE/bioconductor so that's probably not going to happen.

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tetris11|1 year ago

To be fair to them, getting anything submitted to buoconductor requires a ton of effort, and the pay off is often less concise code