Engines have a significantly bigger edge in frc. Humans generally know enough about openings to minimize mistakes for the first 10 or so moves (such that computers playing humans generally are trained to make a couple highly dubious moves to get far away from theory in the opening). engines on the other hand don't go based on theory and are just as capable in 960 as they are in regular chess.
That's hard to answer because the advantage is essentially infinitely large. Engines never lose or draw against unassisted humans. Any modern chess engine, if it plays 100 games against any human (even magnus), will have a record of 100 wins, 0 draws, and 0 losses. This is true both in standard chess and Chess960.
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